IL_8CG8_186

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8CG8|1|c|A|579, 8CG8|1|c|U|581, 8CG8|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|c|G|561
8CG8|1|c|OMG|562
8CG8|1|c|U|563
8CG8|1|c|G|564
8CG8|1|c|C|565
8CG8|1|c|C|566
8CG8|1|c|A|567
8CG8|1|c|G|568
*
8CG8|1|c|C|575
8CG8|1|c|G|576
8CG8|1|c|G|577
8CG8|1|c|OMU|578
8CG8|1|c|A|579
8CG8|1|c|A|580
8CG8|1|c|U|581
8CG8|1|c|U|582
8CG8|1|c|C|583
8CG8|1|c|C|584

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Aa

Elongation factor 2

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A