IL_8CG8_206

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8CG8|1|c|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_206 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.3254

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

8CG8|1|c|G|1051
8CG8|1|c|U|1052
8CG8|1|c|G|1053
*
8CG8|1|c|C|1066
8CG8|1|c|C|1067

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain d

40S ribosomal protein S0-A

Chain e

40S ribosomal protein S1-A