IL_8CG8_246

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUCCGG*UUGA

Length

10 nucleotides

Bulged bases

8CG8|1|AA|U|1015, 8CG8|1|AA|C|1016, 8CG8|1|AA|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|AA|U|1014
8CG8|1|AA|U|1015
8CG8|1|AA|C|1016
8CG8|1|AA|C|1017
8CG8|1|AA|G|1018
8CG8|1|AA|G|1019
*
8CG8|1|AA|U|1033
8CG8|1|AA|U|1034
8CG8|1|AA|G|1035
8CG8|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10

Chain NN

60S ribosomal protein L11-A