IL_8CG8_255

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAU*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_255 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.2941

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8CG8|1|c|C|270
8CG8|1|c|A|271
8CG8|1|c|U|272
*
8CG8|1|c|G|284
8CG8|1|c|G|285

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A