IL_8CG8_256

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUUCGAU*AUG

Length

10 nucleotides

Bulged bases

8CG8|1|c|U|320, 8CG8|1|c|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|c|U|318
8CG8|1|c|U|319
8CG8|1|c|U|320
8CG8|1|c|C|321
8CG8|1|c|G|322
8CG8|1|c|A|323
8CG8|1|c|U|324
*
8CG8|1|c|A|344
8CG8|1|c|U|345
8CG8|1|c|G|346

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L19-A

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A