IL_8CGD_006
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_006 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0457
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CGD|1|a|G|188
8CGD|1|a|G|189
8CGD|1|a|A|190
8CGD|1|a|A|191
8CGD|1|a|C|192
8CGD|1|a|U|193
8CGD|1|a|G|194
*
8CGD|1|a|C|201
8CGD|1|a|U|202
8CGD|1|a|A|203
8CGD|1|a|A|204
8CGD|1|a|G|205
8CGD|1|a|U|206
8CGD|1|a|A|207
8CGD|1|a|C|208
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
- Chain w
- Large ribosomal subunit protein bL28
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