IL_8CGD_009

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3843

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8CGD|1|a|C|274
8CGD|1|a|C|275
8CGD|1|a|U|276
8CGD|1|a|G|277
8CGD|1|a|A|278
8CGD|1|a|A|279
8CGD|1|a|U|280
8CGD|1|a|C|281
*
8CGD|1|a|G|359
8CGD|1|a|U|360
8CGD|1|a|G|361
8CGD|1|a|A|362
8CGD|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains