IL_8CGD_011
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8CGD|1|a|A|504, 8CGD|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_011 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0513
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8CGD|1|a|G|481
8CGD|1|a|A|482
8CGD|1|a|A|483
8CGD|1|a|C|484
*
8CGD|1|a|G|496
8CGD|1|a|A|497
8CGD|1|a|G|498
8CGD|1|a|U|499
8CGD|1|a|G|500
8CGD|1|a|A|501
8CGD|1|a|A|502
8CGD|1|a|A|503
8CGD|1|a|A|504
8CGD|1|a|A|505
8CGD|1|a|G|506
8CGD|1|a|A|507
8CGD|1|a|A|508
8CGD|1|a|C|509
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: