IL_8CGD_038
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8CGD|1|a|A|1127, 8CGD|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_038 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0547
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8CGD|1|a|G|1024
8CGD|1|a|G|1025
8CGD|1|a|G|1026
8CGD|1|a|A|1027
8CGD|1|a|A|1028
8CGD|1|a|A|1029
8CGD|1|a|C|1030
*
8CGD|1|a|G|1124
8CGD|1|a|G|1125
8CGD|1|a|A|1126
8CGD|1|a|A|1127
8CGD|1|a|G|1128
8CGD|1|a|A|1129
8CGD|1|a|U|1130
8CGD|1|a|G|1131
8CGD|1|a|U|1132
8CGD|1|a|A|1133
8CGD|1|a|A|1134
8CGD|1|a|C|1135
8CGD|1|a|G|1136
8CGD|1|a|G|1137
8CGD|1|a|G|1138
8CGD|1|a|G|1139
8CGD|1|a|C|1140
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain l
- Large ribosomal subunit protein uL16
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