IL_8CGD_045
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_045 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0447
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CGD|1|a|A|1262
8CGD|1|a|U|1263
8CGD|1|a|A|1264
8CGD|1|a|A|1265
8CGD|1|a|G|1266
8CGD|1|a|U|1267
8CGD|1|a|A|1268
8CGD|1|a|A|1269
*
8CGD|1|a|U|2011
8CGD|1|a|G|2012
8CGD|1|a|A|2013
8CGD|1|a|A|2014
8CGD|1|a|A|2015
8CGD|1|a|U|2016
8CGD|1|a|U|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: