IL_8CGD_065

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8CGD|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_065 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0458

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8CGD|1|a|C|1686
8CGD|1|a|G|1687
8CGD|1|a|U|1688
8CGD|1|a|A|1689
8CGD|1|a|A|1690
8CGD|1|a|C|1691
*
8CGD|1|a|G|1696
8CGD|1|a|G|1697
8CGD|1|a|A|1698
8CGD|1|a|G|1699
8CGD|1|a|A|1700
8CGD|1|a|A|1701
8CGD|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2