IL_8CGD_103

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_103 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0789

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

8CGD|1|a|C|2806
8CGD|1|a|U|2807
8CGD|1|a|G|2808
8CGD|1|a|A|2809
8CGD|1|a|A|2810
8CGD|1|a|G|2811
*
8CGD|1|a|C|2889
8CGD|1|a|G|2890
8CGD|1|a|U|2891
8CGD|1|a|G|2892

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32