IL_8CGD_106

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_106 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0403

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CGD|1|a|U|2847
8CGD|1|a|G|2848
8CGD|1|a|U|2849
8CGD|1|a|A|2850
8CGD|1|a|A|2851
8CGD|1|a|G|2852
*
8CGD|1|a|U|2865
8CGD|1|a|U|2866
8CGD|1|a|G|2867
8CGD|1|a|A|2868
8CGD|1|a|G|2869

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19