3D structure

PDB id
8CGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pentacycline TP038 bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGI_016 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.0913
The information below is about IL_5J7L_056
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8CGI|1|A|C|1259
8CGI|1|A|G|1260
8CGI|1|A|A|1261
8CGI|1|A|C|1262
8CGI|1|A|C|1263
*
8CGI|1|A|G|1272
8CGI|1|A|C|1273
8CGI|1|A|A|1274
8CGI|1|A|A|1275
8CGI|1|A|G|1276

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
Small ribosomal subunit protein uS14
Chain S
Small ribosomal subunit protein uS19

Coloring options:


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