IL_8CGJ_008

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

8CGJ|1|A|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_008 not in the Motif Atlas

Geometric match to IL_7A0S_099

Geometric discrepancy: 0.391

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8CGJ|1|A|G|75
8CGJ|1|A|G|76
*
8CGJ|1|A|U|93
8CGJ|1|A|G|94
8CGJ|1|A|C|95

Current chains

Chain A

16S rRNA

Nearby chains