3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGJ_024 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.0428
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

8CGJ|1|A|C|504
8CGJ|1|A|G|505
8CGJ|1|A|G|506
8CGJ|1|A|C|507
8CGJ|1|A|U|508
8CGJ|1|A|A|509
8CGJ|1|A|A|510
8CGJ|1|A|C|511
*
8CGJ|1|A|G|540
8CGJ|1|A|G|541

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain L
Small ribosomal subunit protein uS12

Coloring options:


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