3D structure

PDB id
8CGK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Lincomycin and Avilamycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.64 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
8CGK|1|a|A|504, 8CGK|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGK_012 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0514
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

8CGK|1|a|G|481
8CGK|1|a|A|482
8CGK|1|a|A|483
8CGK|1|a|C|484
*
8CGK|1|a|G|496
8CGK|1|a|A|497
8CGK|1|a|G|498
8CGK|1|a|U|499
8CGK|1|a|G|500
8CGK|1|a|A|501
8CGK|1|a|A|502
8CGK|1|a|A|503
8CGK|1|a|A|504
8CGK|1|a|A|505
8CGK|1|a|G|506
8CGK|1|a|A|507
8CGK|1|a|A|508
8CGK|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain r
Large ribosomal subunit protein uL22
Chain t
Large ribosomal subunit protein uL24

Coloring options:


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