IL_8CGK_034

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8CGK|1|a|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_034 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.0616

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8CGK|1|a|G|1011
8CGK|1|a|U|1012
8CGK|1|a|C|1013
*
8CGK|1|a|G|1149
8CGK|1|a|C|1150

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20