IL_8CGK_061

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8CGK|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_061 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0351

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|C|1686
8CGK|1|a|G|1687
8CGK|1|a|U|1688
8CGK|1|a|A|1689
8CGK|1|a|A|1690
8CGK|1|a|C|1691
*
8CGK|1|a|G|1696
8CGK|1|a|G|1697
8CGK|1|a|A|1698
8CGK|1|a|G|1699
8CGK|1|a|A|1700
8CGK|1|a|A|1701
8CGK|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2