IL_8CGK_083

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

AGG*CA(OMC)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_083 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.0521

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGK|1|a|A|2453
8CGK|1|a|G|2454
8CGK|1|a|G|2455
*
8CGK|1|a|C|2496
8CGK|1|a|A|2497
8CGK|1|a|OMC|2498
8CGK|1|a|C|2499
8CGK|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain l

Large ribosomal subunit protein uL16