IL_8CGN_027

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_027 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0827

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CGN|1|AA|C|758
8CGN|1|AA|U|759
8CGN|1|AA|G|760
8CGN|1|AA|A|761
8CGN|1|AA|U|762
8CGN|1|AA|G|763
*
8CGN|1|AA|C|768
8CGN|1|AA|G|769
8CGN|1|AA|G|770
8CGN|1|AA|A|771
8CGN|1|AA|U|772
8CGN|1|AA|G|773

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L42-A