3D structure

PDB id
8CGN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated 80S S. cerevisiae ribosome with ligands
Experimental method
ELECTRON MICROSCOPY
Resolution
2.28 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
8CGN|1|AA|G|1236
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGN_058 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.3452
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8CGN|1|AA|G|1234
8CGN|1|AA|U|1235
8CGN|1|AA|G|1236
8CGN|1|AA|G|1237
8CGN|1|AA|C|1238
*
8CGN|1|AA|G|1250
8CGN|1|AA|A|1251
8CGN|1|AA|A|1252
8CGN|1|AA|U|1253
8CGN|1|AA|C|1254

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain DD
60S acidic ribosomal protein P0
Chain Ee
60S ribosomal protein L12-A

Coloring options:


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