IL_8CGN_059

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8CGN|1|AA|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_059 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8CGN|1|AA|G|1262
8CGN|1|AA|A|1263
8CGN|1|AA|G|1264
8CGN|1|AA|U|1265
8CGN|1|AA|G|1266
*
8CGN|1|AA|C|1275
8CGN|1|AA|U|1276
8CGN|1|AA|C|1277

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A

Chain Y

Ubiquitin-60S ribosomal protein L40