IL_8CGN_093

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

8CGN|1|AA|U|2282, 8CGN|1|AA|C|2287, 8CGN|1|AA|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|C|2277
8CGN|1|AA|5MC|2278
8CGN|1|AA|A|2279
8CGN|1|AA|A2M|2280
8CGN|1|AA|A2M|2281
8CGN|1|AA|U|2282
8CGN|1|AA|G|2283
8CGN|1|AA|C|2284
8CGN|1|AA|C|2285
8CGN|1|AA|U|2286
8CGN|1|AA|C|2287
8CGN|1|AA|OMG|2288
8CGN|1|AA|U|2289
*
8CGN|1|AA|A|2303
8CGN|1|AA|C|2304
8CGN|1|AA|G|2305
8CGN|1|AA|C|2306
8CGN|1|AA|G|2307

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain c

Small subunit ribosomal RNA; SSU rRNA