IL_8CGN_099

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8CGN|1|AA|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_099 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0544

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8CGN|1|AA|U|2423
8CGN|1|AA|A|2424
8CGN|1|AA|G|2425
*
8CGN|1|AA|U|2604
8CGN|1|AA|G|2605
8CGN|1|AA|G|2606
8CGN|1|AA|G|2607

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain EE

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L42-A