IL_8CGN_102

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CGN|1|AA|G|2481

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|G|2452
8CGN|1|AA|U|2453
8CGN|1|AA|G|2454
8CGN|1|AA|U|2455
8CGN|1|AA|A|2456
8CGN|1|AA|G|2457
8CGN|1|AA|A|2458
8CGN|1|AA|A|2459
8CGN|1|AA|U|2460
8CGN|1|AA|A|2461
8CGN|1|AA|A|2462
8CGN|1|AA|G|2463
8CGN|1|AA|U|2464
8CGN|1|AA|G|2465
8CGN|1|AA|G|2466
8CGN|1|AA|G|2467
8CGN|1|AA|A|2468
8CGN|1|AA|G|2469
*
8CGN|1|AA|C|2476
8CGN|1|AA|G|2477
8CGN|1|AA|C|2478
8CGN|1|AA|C|2479
8CGN|1|AA|A|2480
8CGN|1|AA|G|2481
8CGN|1|AA|U|2482
8CGN|1|AA|G|2483
8CGN|1|AA|A|2484
8CGN|1|AA|A|2485
8CGN|1|AA|A|2486
8CGN|1|AA|U|2487
8CGN|1|AA|A|2488
8CGN|1|AA|C|2489
8CGN|1|AA|C|2490
8CGN|1|AA|A|2491
8CGN|1|AA|C|2492
8CGN|1|AA|U|2493
8CGN|1|AA|A|2494
8CGN|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA