IL_8CGN_103

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

8CGN|1|AA|G|2522, 8CGN|1|AA|G|2585, 8CGN|1|AA|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_103 not in the Motif Atlas

Homologous match to IL_8C3A_106

Geometric discrepancy: 0.0741

The information below is about IL_8C3A_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74114.1

Basepair signature

cWW-cWS-cWW-L-R

Number of instances in this motif group

2

Unit IDs

8CGN|1|AA|A|2520
8CGN|1|AA|U|2521
8CGN|1|AA|G|2522
8CGN|1|AA|A|2523
8CGN|1|AA|A|2524
8CGN|1|AA|G|2525
8CGN|1|AA|C|2526
*
8CGN|1|AA|G|2584
8CGN|1|AA|G|2585
8CGN|1|AA|G|2586
8CGN|1|AA|U|2587

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A