3D structure

PDB id
8CGN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated 80S S. cerevisiae ribosome with ligands
Experimental method
ELECTRON MICROSCOPY
Resolution
2.28 Å

Loop

Sequence
UUU*A(OMG)A
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGN_108 not in the Motif Atlas
Geometric match to IL_3SZX_003
Geometric discrepancy: 0.0895
The information below is about IL_3SZX_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8CGN|1|AA|U|2766
8CGN|1|AA|U|2767
8CGN|1|AA|U|2768
*
8CGN|1|AA|A|2790
8CGN|1|AA|OMG|2791
8CGN|1|AA|A|2792

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L18-A
Chain Cc
Transfer RNA; tRNA
Chain M
60S ribosomal protein L28
Chain a
60S ribosomal protein L42-A

Coloring options:


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