IL_8CGN_123

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8CGN|1|AA|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_123 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.144

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8CGN|1|AA|C|2960
8CGN|1|AA|G|2961
*
8CGN|1|AA|C|2970
8CGN|1|AA|A|2971
8CGN|1|AA|G|2972

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain EE

60S ribosomal protein L2-A

Chain MM

60S ribosomal protein L10