IL_8CGN_145

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_145 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1566

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8CGN|1|AA|A|3342
8CGN|1|AA|G|3343
8CGN|1|AA|A|3344
8CGN|1|AA|G|3345
*
8CGN|1|AA|C|3360
8CGN|1|AA|G|3361
8CGN|1|AA|A|3362
8CGN|1|AA|U|3363

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain G

60S ribosomal protein L22-A

Chain l

40S ribosomal protein S8-B