IL_8CGN_196
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- AAAAAUU*AUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGN_196 not in the Motif Atlas
- Homologous match to IL_8C3A_433
- Geometric discrepancy: 0.2564
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
8CGN|1|c|A|753
8CGN|1|c|A|754
8CGN|1|c|A|755
8CGN|1|c|A|756
8CGN|1|c|A|757
8CGN|1|c|U|758
8CGN|1|c|U|759
*
8CGN|1|c|A|791
8CGN|1|c|U|792
8CGN|1|c|A|793
8CGN|1|c|U|794
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein S4-A
- Chain m
- 40S ribosomal protein S9-A
- Chain o
- 40S ribosomal protein S11-A
- Chain y
- 40S ribosomal protein S22-A
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