IL_8CGN_216

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

8CGN|1|c|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|c|A|1223
8CGN|1|c|A|1224
8CGN|1|c|U|1225
8CGN|1|c|A|1226
8CGN|1|c|A|1227
8CGN|1|c|G|1228
8CGN|1|c|G|1229
8CGN|1|c|A|1230
8CGN|1|c|U|1231
8CGN|1|c|U|1232
8CGN|1|c|G|1233
*
8CGN|1|c|C|1252
8CGN|1|c|U|1253
8CGN|1|c|U|1254
8CGN|1|c|G|1255
8CGN|1|c|A|1256
8CGN|1|c|U|1257
8CGN|1|c|U|1258
8CGN|1|c|U|1259
8CGN|1|c|U|1260

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A