IL_8CGN_252

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_252 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0459

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8CGN|1|AA|G|1898
8CGN|1|AA|G|1899
8CGN|1|AA|A|1900
8CGN|1|AA|A|1901
8CGN|1|AA|G|1902
8CGN|1|AA|U|1903
8CGN|1|AA|C|1904
8CGN|1|AA|G|1905
8CGN|1|AA|G|1906
*
8CGN|1|AA|C|2333
8CGN|1|AA|U|2334
8CGN|1|AA|G|2335
8CGN|1|AA|U|2336
8CGN|1|AA|OMC|2337

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A

Chain I

60S ribosomal protein L24-A