3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
UGAAGAAG*UUGUAAAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGR_019 not in the Motif Atlas
Homologous match to IL_6CZR_129
Geometric discrepancy: 0.199
The information below is about IL_6CZR_129
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58819.1
Basepair signature
cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

8CGR|1|A|U|409
8CGR|1|A|G|410
8CGR|1|A|A|411
8CGR|1|A|A|412
8CGR|1|A|G|413
8CGR|1|A|A|414
8CGR|1|A|A|415
8CGR|1|A|G|416
*
8CGR|1|A|U|426
8CGR|1|A|U|427
8CGR|1|A|G|428
8CGR|1|A|U|429
8CGR|1|A|A|430
8CGR|1|A|A|431
8CGR|1|A|A|432
8CGR|1|A|G|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4

Coloring options:


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