IL_8CGR_035

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGR_035 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0638

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8CGR|1|A|C|779
8CGR|1|A|A|780
8CGR|1|A|A|781
8CGR|1|A|A|782
8CGR|1|A|C|783
*
8CGR|1|A|G|799
8CGR|1|A|G|800
8CGR|1|A|U|801
8CGR|1|A|A|802
8CGR|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21