3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
GA*UAC
Length
5 nucleotides
Bulged bases
8CGR|1|A|A|1394
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGR_037 not in the Motif Atlas
Homologous match to IL_5J7L_039
Geometric discrepancy: 0.0529
The information below is about IL_5J7L_039
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

8CGR|1|A|G|922
8CGR|1|A|A|923
*
8CGR|1|A|U|1393
8CGR|1|A|A|1394
8CGR|1|A|C|1395

Current chains

Chain A
16S rRNA

Nearby chains

Chain E
Small ribosomal subunit protein uS5

Coloring options:


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