IL_8CGR_043

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGR_043 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0701

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8CGR|1|A|G|1416
8CGR|1|A|G|1417
8CGR|1|A|A|1418
8CGR|1|A|G|1419
*
8CGR|1|A|U|1481
8CGR|1|A|G|1482
8CGR|1|A|A|1483
8CGR|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains