IL_8CGU_019

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

UGAAGAA*UGUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGU_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.118

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8CGU|1|A|U|409
8CGU|1|A|G|410
8CGU|1|A|A|411
8CGU|1|A|A|412
8CGU|1|A|G|413
8CGU|1|A|A|414
8CGU|1|A|A|415
*
8CGU|1|A|U|427
8CGU|1|A|G|428
8CGU|1|A|U|429
8CGU|1|A|A|430
8CGU|1|A|A|431
8CGU|1|A|A|432
8CGU|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4