IL_8CGV_009

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGV_009 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1735

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8CGV|1|a|G|271
8CGV|1|a|A|272
8CGV|1|a|G|273
*
8CGV|1|a|C|364
8CGV|1|a|U|365
8CGV|1|a|C|366

Current chains

Chain a

23S rRNA

Nearby chains