IL_8CGV_063

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8CGV|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGV_063 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0425

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|C|1686
8CGV|1|a|G|1687
8CGV|1|a|U|1688
8CGV|1|a|A|1689
8CGV|1|a|A|1690
8CGV|1|a|C|1691
*
8CGV|1|a|G|1696
8CGV|1|a|G|1697
8CGV|1|a|A|1698
8CGV|1|a|G|1699
8CGV|1|a|A|1700
8CGV|1|a|A|1701
8CGV|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2