IL_8CGV_088

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGV_088 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.3076

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8CGV|1|a|A|2459
8CGV|1|a|U|2460
8CGV|1|a|A|2461
*
8CGV|1|a|U|2489
8CGV|1|a|G|2490
8CGV|1|a|U|2491
8CGV|1|a|U|2492
8CGV|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain l

Large ribosomal subunit protein uL16