IL_8CH6_001

3D structure

PDB id

8CH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

UCG*CA

Length

5 nucleotides

Bulged bases

8CH6|1|d|C|6

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CH6_001 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.3429

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8CH6|1|d|U|5
8CH6|1|d|C|6
8CH6|1|d|G|7
*
8CH6|1|d|C|14
8CH6|1|d|A|15

Current chains

Chain d

RNU6-1

Nearby chains