IL_8CRE_015

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGUAC

Length

18 nucleotides

Bulged bases

8CRE|1|1|A|398, 8CRE|1|1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8CRE|1|1|G|376
8CRE|1|1|A|377
8CRE|1|1|A|378
8CRE|1|1|C|379
*
8CRE|1|1|G|390
8CRE|1|1|A|391
8CRE|1|1|G|392
8CRE|1|1|U|393
8CRE|1|1|G|394
8CRE|1|1|A|395
8CRE|1|1|A|396
8CRE|1|1|A|397
8CRE|1|1|A|398
8CRE|1|1|A|399
8CRE|1|1|G|400
8CRE|1|1|U|401
8CRE|1|1|A|402
8CRE|1|1|C|403

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain AM

60S ribosomal protein L39

Chain x

Ribosomal protein L22