IL_8CRE_022

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUGUGG*UGUUAUAGC

Length

17 nucleotides

Bulged bases

8CRE|1|1|U|530, 8CRE|1|1|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CRE|1|1|G|527
8CRE|1|1|A|528
8CRE|1|1|A|529
8CRE|1|1|U|530
8CRE|1|1|G|531
8CRE|1|1|U|532
8CRE|1|1|G|533
8CRE|1|1|G|534
*
8CRE|1|1|U|551
8CRE|1|1|G|552
8CRE|1|1|U|553
8CRE|1|1|U|554
8CRE|1|1|A|555
8CRE|1|1|U|556
8CRE|1|1|A|557
8CRE|1|1|G|558
8CRE|1|1|C|559

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain u

60S ribosomal protein L14-B