3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
8CRE|1|1|C|1192, 8CRE|1|1|A|1298, 8CRE|1|1|U|1301, 8CRE|1|1|G|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83149.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

8CRE|1|1|G|1190
8CRE|1|1|A|1191
8CRE|1|1|C|1192
8CRE|1|1|A|1193
8CRE|1|1|C|1194
8CRE|1|1|C|1195
8CRE|1|1|A|1196
8CRE|1|1|C|1197
8CRE|1|1|A|1198
8CRE|1|1|A|1199
8CRE|1|1|A|1200
8CRE|1|1|A|1201
*
8CRE|1|1|U|1295
8CRE|1|1|G|1296
8CRE|1|1|A|1297
8CRE|1|1|A|1298
8CRE|1|1|A|1299
8CRE|1|1|A|1300
8CRE|1|1|U|1301
8CRE|1|1|G|1302
8CRE|1|1|G|1303
8CRE|1|1|A|1304
8CRE|1|1|U|1305
8CRE|1|1|G|1306
8CRE|1|1|G|1307
8CRE|1|1|C|1308
8CRE|1|1|G|1309
8CRE|1|1|C|1310

Current chains

Chain 1
25S

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain AG
60S ribosomal protein L33-A
Chain AN
60S ribosomal protein L40-B
Chain k
60S ribosomal protein L3
Chain o
60S ribosomal protein L7-A
Chain r
60S ribosomal protein L10
Chain w
Ribosomal protein L13

Coloring options:

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