IL_8CRE_063

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

8CRE|1|1|C|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8CRE|1|1|U|1384
8CRE|1|1|G|1385
8CRE|1|1|A|1386
8CRE|1|1|C|1387
8CRE|1|1|G|1388
8CRE|1|1|A|1389
8CRE|1|1|A|1390
8CRE|1|1|G|1391
*
8CRE|1|1|U|1411
8CRE|1|1|C|1412
8CRE|1|1|G|1413
8CRE|1|1|A|1414
8CRE|1|1|A|1415

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-B

Chain x

Ribosomal protein L22