3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UACGAAUAAG*CGCUGGA
Length
17 nucleotides
Bulged bases
8CRE|1|1|A|3150, 8CRE|1|1|A|3156, 8CRE|1|1|C|3171, 8CRE|1|1|U|3172, 8CRE|1|1|G|3174
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42231.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-cSS-L
Number of instances in this motif group
2

Unit IDs

8CRE|1|1|U|3149
8CRE|1|1|A|3150
8CRE|1|1|C|3151
8CRE|1|1|G|3152
8CRE|1|1|A|3153
8CRE|1|1|A|3154
8CRE|1|1|U|3155
8CRE|1|1|A|3156
8CRE|1|1|A|3157
8CRE|1|1|G|3158
*
8CRE|1|1|C|3169
8CRE|1|1|G|3170
8CRE|1|1|C|3171
8CRE|1|1|U|3172
8CRE|1|1|G|3173
8CRE|1|1|G|3174
8CRE|1|1|A|3175

Current chains

Chain 1
25S

Nearby chains

Chain 0
60S ribosomal protein L20
Chain AG
60S ribosomal protein L33-A
Chain n
60S ribosomal protein L6
Chain q
60S ribosomal protein L9-B
Chain u
60S ribosomal protein L14-B
Chain w
Ribosomal protein L13

Coloring options:

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