IL_8CRE_165
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8CRE|1|AS|A|398, 8CRE|1|AS|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_165 not in the Motif Atlas
- Geometric match to IL_8C3A_015
- Geometric discrepancy: 0.0721
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8CRE|1|AS|G|376
8CRE|1|AS|A|377
8CRE|1|AS|A|378
8CRE|1|AS|C|379
*
8CRE|1|AS|G|390
8CRE|1|AS|A|391
8CRE|1|AS|G|392
8CRE|1|AS|U|393
8CRE|1|AS|G|394
8CRE|1|AS|A|395
8CRE|1|AS|A|396
8CRE|1|AS|A|397
8CRE|1|AS|A|398
8CRE|1|AS|A|399
8CRE|1|AS|G|400
8CRE|1|AS|U|401
8CRE|1|AS|A|402
8CRE|1|AS|C|403
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BK
- Ribosomal protein L22
- Chain BT
- Ribosomal protein L24
- Chain CG
- 60S ribosomal protein L39
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