IL_8CRE_166
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_166 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0449
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CRE|1|AS|G|404
8CRE|1|AS|U|405
8CRE|1|AS|G|406
8CRE|1|AS|A|407
8CRE|1|AS|A|408
8CRE|1|AS|A|409
8CRE|1|AS|U|410
*
8CRE|1|AU|A|13
8CRE|1|AU|C|14
8CRE|1|AU|G|15
8CRE|1|AU|G|16
8CRE|1|AU|A|17
8CRE|1|AU|U|18
8CRE|1|AU|C|19
Current chains
- Chain AS
- 25S
- Chain AU
- 5.8S
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain BZ
- 60S ribosomal protein L32
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