IL_8CRE_250

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8CRE|1|AS|U|2388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_250 not in the Motif Atlas

Homologous match to IL_8P9A_321

Geometric discrepancy: 0.0636

The information below is about IL_8P9A_321

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8CRE|1|AS|G|2387
8CRE|1|AS|U|2388
8CRE|1|AS|U|2389
*
8CRE|1|AS|A|2783
8CRE|1|AS|C|2784

Current chains

Chain AS

25S

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BV

60S ribosomal protein L28

Chain BW

60S ribosomal protein L29